| 简历： |
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博士，副研究员。2016年于中国科学院大学毕业并取得博士学位，博士期间工作获得“中国科学院优秀博士论文”。工作期间的研究方向为：宏基因组学、单细胞组学和空间多组学相关的计算方法学开发。迄今以第一（及共一）作者已在Genome Biology、Nature Communications、Genome Medicine、Cell Report和Nuleic Acids Research等国际学术刊物上发表研究论文11篇。作为项目负责人主持2项国家自然科学基金课题，承担了多项国家重大研发计划和中国科学院重点部署项目子课题、技术创新项目等。 |
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| 研究领域： |
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1.微生物基因组组装算法开发；
2.转录组拼接算法和数据挖掘算法开发。 |
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| 代表论著： |
- Wu W^, Ji P^, Zhao F. CircAltas: an integrated resource of one million highly confident circular RNAs from 1,070 vertebrate transcriptomes. Genome Biology 2020. (co-first author)
- Ji P^, Wu W^, Chen S^, et al. Expanded expression landscape and prioritization of circular RNAs in mammals. Cell Reports 2019.
- Zheng Y^, Ji P^, Chen S, Hou L, Zhao F. Reconstruction of full-length circular RNA enables isoform-level quantification. Genome Medicine 2019. (co-first author)
- Ji P^, Zhang Y^, Wang J, Zhao F. MetaSort untangles metagenome assembly by reducing microbial community complexity. Nature Communication 2017; 8:14306.
- Shi W^, Ji P^, Zhao F. The combination of direct and paired link graphs can boost repetitive genome assembly. Nucleic Acids Research 2017; 45:e43. (co-first author)
- Zhang Y^, Ji P^, Wang J, Zhao F. RiboFR-Seq: a novel approach to linking 16S rRNA amplicon profiles to metagenomes. Nucleic Acids Research 2016. (co-first author)
- Peng G^, Ji P^, Zhao F. A novel codon-based de Bruijn graph algorithm for gene construction from unassembled transcriptomes. Genome Biology 2016; 17:232. (co-first author)
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